PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8202712.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 116aa MW: 13321.1 Da PI: 8.4472 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.8 | 6.7e-13 | 13 | 113 | 6 | 95 |
NAM 6 rFhPtdeelvveyLkkkvegkklelee..vikevdiy...kvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratk. 79 FhPt+ elv ++L +k++ + + ++ +++++ iy + Pw++ + ++k +++ +yfFs ++k +++++r++ +++ Rmu_co8202712.1_g000001.1 13 TFHPTEAELVGFFLYNKISMASSSGNQiqTFPKICIYgetGLPPWEIWRiyqQFKFpHQDFLYFFSWTKKVSPNKSRNSGTVSs 96 5*****************99995552211233433332115689999632333333334456************9999985433 PP NAM 80 .sgyWkatgkdkevlsk 95 g+W++t ++v+ + Rmu_co8202712.1_g000001.1 97 dGGTWRETEAARPVYIR 113 499***********985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence |
MTLDQLDVGV VKTFHPTEAE LVGFFLYNKI SMASSSGNQI QTFPKICIYG ETGLPPWEIW 60 RIYQQFKFPH QDFLYFFSWT KKVSPNKSRN SGTVSSDGGT WRETEAARPV YIRGSE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 3e-07 | NAC family protein |