PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8189974.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 221aa MW: 24816.6 Da PI: 9.9678 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60 | 5.8e-19 | 13 | 101 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +Wt++e + Li a+r+++ +lrr++lk ++W++v+++ + +++ qC++k+e+l+kr++++k+++++ + ss++++ Rmu_co8189974.1_g000001.1 13 CWTQDEARSLILAYRDRWFALRRTNLKSADWDHVAAATaaeAPSSPPKTALQCRHKMEKLRKRFRAEKQRASGYPGRFSSSWAL 96 8************************************96444444589*************************9999******* PP trihelix 82 fdqle 86 f+ ++ Rmu_co8189974.1_g000001.1 97 FHLMD 101 **998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
ALPTKPRRVP PPCWTQDEAR SLILAYRDRW FALRRTNLKS ADWDHVAAAT AAEAPSSPPK 60 TALQCRHKME KLRKRFRAEK QRASGYPGRF SSSWALFHLM DEMESGPDPG LDSGGEFGGG 120 FSLKARNLVK FNGNVGRDFS PDVDENSSFY SEAEDYVNQG FRPKSNGKTD VNLKHSFRQH 180 GDYGVDIRSD RDFVPAGFQP KSSGIVDGNA KRNVRFKEFD G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 2e-27 | Trihelix family protein |