PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8175406.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 158aa MW: 17446.6 Da PI: 8.6619 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 68.3 | 2.7e-21 | 23 | 113 | 1 | 88 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceae 76 a+g+kd+h k++ ++g+Rd vRl a++a++f+ +q++L +d +s +++ L+++ak+a+ el+ + +s ++ Rmu_co8175406.1_g000001.1 23 ATGRKDSHNKVCIAKGPRDHHVRLAAHTAIQFYYVQNRLRYDLPSMAVDCLIKKAKAAMEELPPWnpnsifvqT-TS----SPT 101 589*************************************************************9444444321.11....222 PP TCP 77 sssssasnsssg 88 ++++ +++ s g Rmu_co8175406.1_g000001.1 102 ARRNGGQQRSGG 113 333333322222 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence |
MGESHNNLHH RAMTEARGHI LRATGRKDSH NKVCIAKGPR DHHVRLAAHT AIQFYYVQNR 60 LRYDLPSMAV DCLIKKAKAA MEELPPWNPN SIFVQTTSSP TARRNGGQQR SGGAGESEQL 120 EFSAGEDGVE AEVNVNLCLP TIASDLSWAR GRSCRLDS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.2 | 6e-32 | TCP family protein |