PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_co8102754.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 143aa MW: 15352.6 Da PI: 4.7388 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 98.8 | 8.1e-31 | 21 | 142 | 1 | 119 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaal 81 lv+lL++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++La+rla ++ + + ps+ + k+ ++++ al Rmu_co8102754.1_g000001.1 21 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLASRLALVQPLGAVGFVPSKLNAKDyalMDKKEEAL 104 689***************************************************9666666666777777777789999999** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdi 119 +l +e++P ++f+h++aN+ Ilea+ege+ vH++D+++ Rmu_co8102754.1_g000001.1 105 RLVYEICPHIQFGHFVANSSILEALEGESFVHVVDLGM 142 ************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 143 aa Download sequence |
MINAEENGAE QEDGTADGMR LVQLLIACAE AVACRDKSHA SALLSELRAN ALVFGSSFQR 60 VASCFVQGLA SRLALVQPLG AVGFVPSKLN AKDYALMDKK EEALRLVYEI CPHIQFGHFV 120 ANSSILEALE GESFVHVVDL GMT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01570.1 | 4e-20 | GRAS family protein |