PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8093794.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 198aa MW: 22109.8 Da PI: 10.7715 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.5 | 3.4e-36 | 54 | 176 | 3 | 124 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................... 65 kkdrhski+T++g+RdRR+Rls+++a++fF Lqd+LGfdk+skt+eWLl+qa+++ik+ + Rmu_co8093794.1_g000001.1 54 CKKDRHSKISTARGLRDRRMRLSLDVARKFFGLQDMLGFDKASKTVEWLLNQAEAEIKKVKREmngqnenqssstttaagagar 137 69*************************************************************666554333322222222222 PP TCP 66 ..ssssaseceaesssssasnsssg........................kaaksaakskksqksaasalnlakesrakararar 123 + +ss++ + ++ a+ Rmu_co8093794.1_g000001.1 138 arT-----------------TSSISecevvsgtdevatddiidkvsrtsS-----------------------------SSSAK 175 221.................222223333333332223333333333321.............................22222 PP TCP 124 e 124 + Rmu_co8093794.1_g000001.1 176 N 176 2 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
HHHHHHRHHH QTGTPLTATM VEGDSNKDDQ VVIGKEGEQQ QQQQKQIPMT RRSCKKDRHS 60 KISTARGLRD RRMRLSLDVA RKFFGLQDML GFDKASKTVE WLLNQAEAEI KKVKREMNGQ 120 NENQSSSTTT AAGAGARART TSSISECEVV SGTDEVATDD IIDKVSRTSS SSSAKNRIKR 180 TVRQPKKSAL FNPLAKAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 9e-27 | TCP family protein |