PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8060678.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HB-other | ||||||||
Protein Properties | Length: 116aa MW: 13177.2 Da PI: 11.1066 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 44.9 | 1.9e-14 | 15 | 65 | 3 | 53 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 k+ ++t++q+ +Le+ ++ +++ps ++reeL kk+gLte qV+ W+ +R Rmu_co8060678.1_g000001.1 15 KKSRMTRHQVATLEKTYAAEKNPSVSKREELGKKVGLTEIQVRLWYNKKRF 65 56679*****************************************99995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence |
MNRRAKDRRQ GIVAKKSRMT RHQVATLEKT YAAEKNPSVS KREELGKKVG LTEIQVRLWY 60 NKKRFEDQGK ERKEKKKRGT GAKKPPKSAL ASSCDHLAFV SADLTGIPNP DSPCKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 9 | NRRAKDRR |
2 | 62 | 78 | KKRFEDQGKERKEKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 2e-08 | HB-other family protein |