PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8058466.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | LBD | ||||||||
Protein Properties | Length: 154aa MW: 17267.7 Da PI: 9.0831 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129 | 2.1e-40 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l+++++e+am+++++++++ra+dPv G++++i++lq Rmu_co8058466.1_g000001.1 35 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKHLDHHDKEEAMRTIIFQSDVRASDPVGGCYRIIQELQ 118 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 + +e kael+ + ++ Rmu_co8058466.1_g000001.1 119 RLIEYNKAELDIVLHQ 134 **********988776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence |
MSITSGSIVT RTSSPTTPNS SSSSSSTKGN GNTQACAACK YQRRKCAPDC ILAPYFPHDR 60 QRQFLNAHKL FGVSNITKII KHLDHHDKEE AMRTIIFQSD VRASDPVGGC YRIIQELQRL 120 IEYNKAELDI VLHQLAICRA QAQQQQQPIM QQIP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-51 | LBD family protein |