PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8043568.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | FAR1 | ||||||||
Protein Properties | Length: 176aa MW: 20123.4 Da PI: 8.0813 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.5 | 6.1e-25 | 65 | 152 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 kfYn+Y+ + GF+vr+++s+k+ ++ +t+ +++Cskeg+r ++k++ ++++ ++++tr+gC+a+l+++++k+g+++v ++e++ Rmu_co8043568.1_g000001.1 65 KFYNNYGGKHGFNVRIRNSRKN-IENFVTWVRYCCSKEGFRIKDKRR-TNASYSQPVTRCGCQAHLTIQLQKNGNFKVVSFEKN 146 6******************999.6666****************9999.99999******************************* PP FAR1 85 HnHela 90 HnH+l Rmu_co8043568.1_g000001.1 147 HNHPLI 152 ****96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence |
MDNANCTSLG NQPTSNTKDL QGKEQCDHSH CEPTDDLHVV NENNEEAIEE VILGKEFMDV 60 ESASKFYNNY GGKHGFNVRI RNSRKNIENF VTWVRYCCSK EGFRIKDKRR TNASYSQPVT 120 RCGCQAHLTI QLQKNGNFKV VSFEKNHNHP LISTPMKHLL KVNRNISEAQ KAHADD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 4e-20 | FAR1 family protein |