PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_co7961544.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 138aa MW: 15390.3 Da PI: 8.7505 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.6 | 8e-19 | 3 | 60 | 28 | 86 |
trihelix 28 kplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 + lWee++ m + gf rs +Ckekwen+nk++k+ +++kkr +++ +tc+yf++le Rmu_co7961544.1_g000001.1 3 GSLWEEIALGMNRMGFDRSGRKCKEKWENMNKYFKRAITNDKKR-PTNAKTCQYFNELE 60 679***************************************98.88999*******97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 138 aa Download sequence |
SHGSLWEEIA LGMNRMGFDR SGRKCKEKWE NMNKYFKRAI TNDKKRPTNA KTCQYFNELE 60 LLYKNGLLNL GNGFSPTSSL GNGFSCTSNQ KETRSENESQ QCVLSNVDTS LLTCATIPSV 120 LNSNEAAERT RAVVSPAL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76890.2 | 1e-21 | Trihelix family protein |