PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0241861

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 461aa MW: 50496.8 Da PI: 5.4241

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0241861	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEd+ l+++++ G g+W++ ++ g+ R++k+c++rw +yl RcHm_v2.0_Chr7g0241861 14 KGRWTAEEDQTLINYIHANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.6	2.2e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+++++++++ lG++ W++Ia+ ++ gRt++++k++w+++l RcHm_v2.0_Chr7g0241861 67 RGNITPQEEDIIIKLHASLGNR-WSLIASQLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MGRAPCCEKV GLKKGRWTAE EDQTLINYIH ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRTDLKRGNI TPQEEDIIIK LHASLGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIDTFR 120 RPLNMMHMAT AAAASSSSGS STAADVQMNM AMKLGSPTSK RRGRGGRTSR WAMKKNKISY 180 ASTAINHHLD CTHKDDGSAT VTSSSSINMC PPPPPSAAAV AAGIGQKETQ NLGGGGPSDC 240 SEGKIDGGGE VAFNDLMMDA VNETILDPAG ALTLSGERQS DDDDIMGVIR DEDTGKLLCG 300 PNKVMTTCTA AASPEEEHQL DQISATNLSS SSHSNSKSSY YGETEAAAFD GEDWYNSCSN 360 YSAGSAAATC NFNQQKQQLD GMNGTLDDEM RWNWESDIHM HDYLWNIDQK DDENILSWLW 420 EHQAAEDHHD DQNNKSRSDA TVDDEHVPAD KHNAILAWLL S

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MGRAPCCEKV GLKKGRWTAE EDQTLINYIH ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRTDLKRGNI TPQEEDIIIK LHASLGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIDTFR  120
RPLNMMHMAT AAAASSSSGS STAADVQMNM AMKLGSPTSK RRGRGGRTSR WAMKKNKISY  180
ASTAINHHLD CTHKDDGSAT VTSSSSINMC PPPPPSAAAV AAGIGQKETQ NLGGGGPSDC  240
SEGKIDGGGE VAFNDLMMDA VNETILDPAG ALTLSGERQS DDDDIMGVIR DEDTGKLLCG  300
PNKVMTTCTA AASPEEEHQL DQISATNLSS SSHSNSKSSY YGETEAAAFD GEDWYNSCSN  360
YSAGSAAATC NFNQQKQQLD GMNGTLDDEM RWNWESDIHM HDYLWNIDQK DDENILSWLW  420
EHQAAEDHHD DQNNKSRSDA TVDDEHVPAD KHNAILAWLL S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62610.1	8e-71	MYB family protein