PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0241091
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 653aa    MW: 74361.3 Da    PI: 5.8105
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0241091genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS255.12.7e-782836471374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             lv+lLl++Ae v  +++e+a++lL + + + s +g+p+q+++ yf+eAL++r+ +++ +  ++ + + ++  +   +  a+ + +  
  RcHm_v2.0_Chr7g0241091 283 LVHLLLAAAEKVGYQQFERASRLLLQCEWIPSFKGTPVQKVVCYFAEALRERIEKETGQYTSKGHEELSQYAHGLGTNLAYIACHRE 369
                             68*****************************************************77777777777766666666666777778888 PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelg 173
                              P++ + +++a qa+ e v++e+r+H iD++i  G+QW   ++a+a+R+e p   l iT+vg    g k++++etgerLa++A +l+
  RcHm_v2.0_Chr7g0241091 370 VPFHPVLQFAAIQAMIENVANESRIHLIDLEIRSGVQWTGWMEAIAEREECPVkLLTITAVGV---GGKQNIKETGERLASVAMSLN 453
                             8************************************************7665489*******...89******************* PP

                    GRAS 174 vpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +pf+f+ +++++++d++ + + +++ +Ea++V   l l ++ +++ +le+    +++++++++P ++vv+e ea+hns+sF++rf++
  RcHm_v2.0_Chr7g0241091 454 LPFKFKEVIVSDMQDINNQLFeDIEDDEAVVVYAPLILRTMIARPRCLEN----LMRVMRNINPSLMVVIEVEANHNSPSFVHRFID 536
                             ****************9999866778***********************9....********************************* PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             +l +ysa+fd+le+ + ++++ r+ +E   l++ i+n+va+eg+er+ r  ++  Wr+ + ++ + ++++s++   qa+l+ +k+  
  RcHm_v2.0_Chr7g0241091 537 TLFFYSAFFDCLETCM-KQEKYRVIIEGL-LREGIRNIVAAEGSERVVRSVKMDVWRAFFARFSMVEMSFSNSSFYQASLVAKKFCC 621
                             **************96.556667777665.*******************************************************94 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +++ + ++l+ gWk+ p+ s+SaW+
  RcHm_v2.0_Chr7g0241091 622 --TTLDRNGKCLTVGWKGTPIHSLSAWK 647
                             ..59***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    
MANALFSFTP FDFEIQGGLS PPQLEDYDKE ETVMFNVGKR DHLFGLEDQL GGMNTLSSEH  60
GFYQDNDAKT GVVVCHLSKD QNQQSDLENQ QQSKTEFLIL DNFDFETVSS QHGFYHANKA  120
GKDHQHHHYQ QQSKSSFSIL ENFSNFDFYF PSGQVTEPVE NDARFTHSQI RGSDIFEMNT  180
QLLPPQSSLG TLELLNSYGS AFKKLKGERQ SSSRAVKGNE IDQNSRYVVN GKQKLSTEEV  240
MRVAGARYVQ FSSQGYENLY MSMHPFGYAL SGLCEEETKD VELVHLLLAA AEKVGYQQFE  300
RASRLLLQCE WIPSFKGTPV QKVVCYFAEA LRERIEKETG QYTSKGHEEL SQYAHGLGTN  360
LAYIACHREV PFHPVLQFAA IQAMIENVAN ESRIHLIDLE IRSGVQWTGW MEAIAEREEC  420
PVKLLTITAV GVGGKQNIKE TGERLASVAM SLNLPFKFKE VIVSDMQDIN NQLFEDIEDD  480
EAVVVYAPLI LRTMIARPRC LENLMRVMRN INPSLMVVIE VEANHNSPSF VHRFIDTLFF  540
YSAFFDCLET CMKQEKYRVI IEGLLREGIR NIVAAEGSER VVRSVKMDVW RAFFARFSMV  600
EMSFSNSSFY QASLVAKKFC CTTLDRNGKC LTVGWKGTPI HSLSAWKFRL EKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-48GRAS family protein