PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0235271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 233aa    MW: 26756.6 Da    PI: 9.1419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0235271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.6e-17956148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT eEd ll ++++++G g+W++I+   g++R++k+c++rw +yl
  RcHm_v2.0_Chr7g0235271  9 RGAWTIEEDNLLRQCIAKHGEGRWRLIPPAAGLNRCGKSCRLRWVNYL 56
                            89********************************************97 PP
2Myb_DNA-binding40.37.1e-1362105146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg +  +E +ll +++++lG++ W++Ia +++ gRt++++k++w++
  RcHm_v2.0_Chr7g0235271  62 RGDFEDDEVDLLHRLHNLLGNR-WSLIAGRLP-GRTANDVKNFWNT 105
                             788999****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MEDQSGLRRG AWTIEEDNLL RQCIAKHGEG RWRLIPPAAG LNRCGKSCRL RWVNYLKPDI  60
KRGDFEDDEV DLLHRLHNLL GNRWSLIAGR LPGRTANDVK NFWNTKRRRD KPQRLVKPII  120
LRPKPRRLIS TSSLCLTGQG LIGDQSQLKK NISMALPTSS ASPTSPIQQE IDRLRAFLEE  180
EESIRTTTCF SLTPEGLFIE DHIQSENSIS CRALPTSTAL EDQLDWWMTF LDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.11e-47MYB family protein