PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0228051
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Nin-like
Protein Properties Length: 378aa    MW: 42819.2 Da    PI: 4.6903
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0228051genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK75.18.4e-24291340352
                  RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             ++++l+dl++yF+l+i++A+ +Lg c+Tv+KriCR++G++RWP Rkiks+
  RcHm_v2.0_Chr7g0228051 291 AKMKLNDLRAYFHLTIEEASEQLGFCPTVVKRICRKFGVSRWPARKIKSI 340
                             7899********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MTDSPWAVVP YHDPYDHEVP DVVNFINDTP DPTLDTLFDG GVVPSFSHQY PIPQFDNGIQ  60
DFPMSPMWDM GNNYNGGGNN TISALADHPS QCSGRGGGES GFDQNSGLGF GSNVMPPPVW  120
APPPIPFSCC GCQVLREIVH FNRNYIMTLE IHGRLGAICH AIQETRANYL YDSSASIEPH  180
YQNFDFCNKN IEEVKQFLTQ YCLERKVEGY IMQQDPLQAF YQTLCVGMDG EWDDILSYPD  240
EFIPEDLDTT DDFISPNSEM AEEIDEVTVN MKGKGPRLPR FSLAEQRERA AKMKLNDLRA  300
YFHLTIEEAS EQLGFCPTVV KRICRKFGVS RWPARKIKSI ERRISSLRPL LNSYSDSTRV  360
HVAAEIKRLE REVARLVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.12e-14Nin-like family protein