PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0219951
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 338aa    MW: 38136.2 Da    PI: 8.4902
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0219951genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-1780125147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  RcHm_v2.0_Chr7g0219951  80 RGHWRPAEDSKLKELVAQFGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 125
                             899*****************************.***********996 PP
2Myb_DNA-binding53.74.8e-17132175146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r ++ +eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  RcHm_v2.0_Chr7g0219951 132 RRAFNEEEEERLLSAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 175
                             66899*****************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGPQQHHQMR SDSSYRQDLN FFPSQLCLSK TTFGVVANSE MGYGVHDRKS TMYLNLVGDE  60
SDHDDVIQTT AAGKTKLCVR GHWRPAEDSK LKELVAQFGP QNWNLIAEHL DGRSGKSCRL  120
RWFNQLDPRI NRRAFNEEEE ERLLSAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARK  180
HREQSNVYKR RKPSSSSQPI IIPHHDHDEE DGTKNNAFSD RSTISINTSN DESGSAASAS  240
TCTNISLTPS NRPLVPSFFK NINPFQQHKI FGSQMKSCRI KGNENGQSTV SNSETSGDES  300
VLTTYRTNNN NVSSMSGEDQ NEKTSVMPFI DFLGVGST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-68MYB family protein