PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0218501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 467aa    MW: 53015.6 Da    PI: 7.132
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0218501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.61.2e-49361612128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                             +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg 
  RcHm_v2.0_Chr7g0218501  36 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGA 121
                             79***************************.89***************888889********************************** PP

                     NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             d+ + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl
  RcHm_v2.0_Chr7g0218501 122 DRMIRSENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 161
                             **************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    
MAIAATSRMS HEEDESNKQG NHHDEVDDEH EHDMVMPGFR FHPTEEELIE FYLRRKVEGK  60
RFNVELITFL DLYRYDPWEL PAMAAIGEKE WFFYVPRDRK YRNGDRPNRV TTSGYWKATG  120
ADRMIRSENF RSIGLKKTLV FYSGKAPKGI RTSWIMNEYR LPHHETERYQ KGEISLCRVY  180
KRPGVEDHPS LPRSLPSSRA AANANNASTS RSVLAQSSSS STLDKKQHSI NSSLMEKLQA  240
NFNFNGGSPS LGQSVEQLHH HQDQVAVDPK INETEGSSGN SDVTSTLGVG LRSSAPNIPP  300
IHLPSSSLGL QPHHHHHRGV LHLDDQAEQE GMSTFLQQQQ HHHSKPQSML FAGSSVSSTS  360
NPIDDLQRLL NYQQQQAVSN IANQQQALHV QQYYDAHNHN HHHHHQVPSN VVNHFSSPFP  420
LVPPPSSQSQ LSPNGLPITA FSDRLWDWNP ISEPNRAPDQ YNTNPFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-107NAC family protein