PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0217201

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 773aa MW: 87917.3 Da PI: 6.5099

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0217201	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.3	2.1e-31	83	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA++vGFs+r+s ++s+r+g+i++r+ vCs+eg+r++ ++ +++r+r+ tr+gCka+++vkk+++g+w v+kl++eHnHe RcHm_v2.0_Chr7g0217201 83 FYNSYARRVGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRDGGEN--RSKRQRTITRVGCKAQMTVKKQSSGRWAVSKLVKEHNHE 167 9***************************************9988..999********************************** PP FAR1 89 lap 91 l+p RcHm_v2.0_Chr7g0217201 168 LVP 170 *86 PP

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence
MDYKPLASGS DVVEFDLGGS VEDDTIALDL EHPDDGYDLF EEDDLVQLAS SSTRFGDDLG 60 NGDPNLEPYE GMEFDSEQAS RIFYNSYARR VGFSTRVSVY QRSRRDGSII CRQIVCSREG 120 FRRDGGENRS KRQRTITRVG CKAQMTVKKQ SSGRWAVSKL VKEHNHELVP PDKVHCLRSH 180 RHVSGPARSL IDTLQAAGMG PSGVMSVLIK ESGGINNVGF TKVDCQNYMS SSRQRTLGSG 240 GQLVFDYLKR MQDEDPGFFC AVQGDFENST GNIFWADSNS RMNYSYFGDT VTFDTTYRTN 300 RYRVPFAPFT GWNHHGQPVL FGCALLLNES ESSFVWLFQT WLAAMSGCQP VSITTDQDRI 360 IRAAVVQVFP GTRHRFCKWN VFREAQERLS HIYQSHPTFE AEFLRCINVT ETIDEFEICW 420 ESLLKMYDLD SNEWLQSMYH ARQQWVPVFL RDTFFGEMFV TQGSDNINSY FDGYINASTN 480 IQVLIKQYEK AIATRHEKEV KADYDTLNIS PILRTPSPME KQAAKLYTRI IFMKFQEELV 540 ETLAYPATVV DDTGSETMFR VAKFGEDHKG HFVKFNVFEK KASCSCQMFE ISGIICRHIL 600 AVFRVTNVLT LPSHYILKRW TRNAKSGVLL DEHALGLPND SHDSSAARYD NLRREAIKYV 660 EEGAESECVY NVAMDALREA ANKVAAAKKH GPGVVQHTPK NCSQQLVSCT VDQDKKIEEL 720 AAELEIAIQR CEAYQAKLLT ILKDMEEQKL KLSVNVRNVR LNLKMSNHST PFM

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence

MDYKPLASGS DVVEFDLGGS VEDDTIALDL EHPDDGYDLF EEDDLVQLAS SSTRFGDDLG  60
NGDPNLEPYE GMEFDSEQAS RIFYNSYARR VGFSTRVSVY QRSRRDGSII CRQIVCSREG  120
FRRDGGENRS KRQRTITRVG CKAQMTVKKQ SSGRWAVSKL VKEHNHELVP PDKVHCLRSH  180
RHVSGPARSL IDTLQAAGMG PSGVMSVLIK ESGGINNVGF TKVDCQNYMS SSRQRTLGSG  240
GQLVFDYLKR MQDEDPGFFC AVQGDFENST GNIFWADSNS RMNYSYFGDT VTFDTTYRTN  300
RYRVPFAPFT GWNHHGQPVL FGCALLLNES ESSFVWLFQT WLAAMSGCQP VSITTDQDRI  360
IRAAVVQVFP GTRHRFCKWN VFREAQERLS HIYQSHPTFE AEFLRCINVT ETIDEFEICW  420
ESLLKMYDLD SNEWLQSMYH ARQQWVPVFL RDTFFGEMFV TQGSDNINSY FDGYINASTN  480
IQVLIKQYEK AIATRHEKEV KADYDTLNIS PILRTPSPME KQAAKLYTRI IFMKFQEELV  540
ETLAYPATVV DDTGSETMFR VAKFGEDHKG HFVKFNVFEK KASCSCQMFE ISGIICRHIL  600
AVFRVTNVLT LPSHYILKRW TRNAKSGVLL DEHALGLPND SHDSSAARYD NLRREAIKYV  660
EEGAESECVY NVAMDALREA ANKVAAAKKH GPGVVQHTPK NCSQQLVSCT VDQDKKIEEL  720
AAELEIAIQR CEAYQAKLLT ILKDMEEQKL KLSVNVRNVR LNLKMSNHST PFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein