PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0211791
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 282aa    MW: 31580.9 Da    PI: 8.6859
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0211791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.9e-15189280598
                             -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             ++++ +l+s +l++p +f+ +h  ++   ++ t+tl+++  r+W+v++ ++k+++   + ++ W++Fvk n+L++gD ++F+l+g  
  RcHm_v2.0_Chr7g0211791 189 TMTEKYLSS-LLRVPLDFTIKHlcEIG--SHSTVTLQTSGERTWTVQCAVSKCGKNaRFNRASWRGFVKGNQLEAGDDCLFELTG-- 270
                             445555555.59**********77433..5569***************88777666456679********************987.. PP

                             EE..EEEEE- CS
                      B3  89 efelvvkvfr 98 
                             e+ l+v + r
  RcHm_v2.0_Chr7g0211791 271 ERMLKVNIAR 280
                             4445676655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MATMSRPMAS RSNRLMNREG RGHGFPVDSP SFCLKIVTAV DLQDGKELPE LAVTKYGNCM  60
ADSIFLKVPN CGTSWPVELK KTIRGSRIWL QKGWERFTDF YSIDQDYFIV LSYEGEHSYF  120
QVHIFNCSNM EIGYPICGGA GGCMSTPNSK GTSFPSASSA GRDQNNDNQR DFYGANNFKF  180
GDKPSFRVTM TEKYLSSLLR VPLDFTIKHL CEIGSHSTVT LQTSGERTWT VQCAVSKCGK  240
NARFNRASWR GFVKGNQLEA GDDCLFELTG ERMLKVNIAR AK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-14B3 family protein