PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0205651

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 328aa MW: 36986 Da PI: 10.0094

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0205651	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.5	8.3e-19	21	109	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +Wt++e + Li a+r+++ +lrr++lk ++W++v+++ + +++ qC++k+e+l+kry+++k+++++ + ss++++f+ RcHm_v2.0_Chr7g0205651 21 CWTQDEARSLILAYRDRWFALRRTNLKSADWDHVAAATaaaAPSSPPKTALQCRHKMEKLRKRYRAEKQRASGYPGRFSSSWALFHL 107 8**********************************96555555689*********************9999*******9 PP trihelix 85 le 86 ++ RcHm_v2.0_Chr7g0205651 108 MD 109 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MSTVVTTTAL PTKPRRVPPP CWTQDEARSL ILAYRDRWFA LRRTNLKSAD WDHVAAATAA 60 AAPSSPPKTA LQCRHKMEKL RKRYRAEKQR ASGYPGRFSS SWALFHLMDE MESGPDPGFD 120 SGGEFGGGFS LKARNLVKFN GNVGRDFSPD VDENSSFYSE GEDYVNQGFG PKSNGKTDVN 180 LKHSFRKHGD YGVDIRSDRD FVPAGFRPKS SGIVDGNAKR NVRFKEFDGY SCLSGSKFVE 240 KSSVVGIKRD MDPVEDLASS IMRLGEGFVR MEKMKMEMTM EIEKMRMEME LKRNEAMIES 300 HQQIVDAFVN ALLERKRKKK AKVESSHA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	319	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	9e-26	Trihelix family protein