PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0204611
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 341aa    MW: 38196 Da    PI: 8.6459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0204611genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20188238255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g
  RcHm_v2.0_Chr7g0204611 188 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDRAAFKLRG 238
                             8********.**********9...4334*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MEAALSSDMD VLDYIKNHLL GEFSPMSKSF ALTELSASSS SSSSSSSSDL SRSQSSSLST  60
SQSSIEISDY LDNELFDFTS NNPIPNDYFF EFETKPQVID LTTPKPTYLS SQTSFEFDSK  120
PQVTNTSFFE FQPEVQILNQ TAPKPVTSAR KPALTISLPN KTEWIQFSKS EKPPVVQKTV  180
QNEERKKHYR GVRQRPWGKY AAEIRDPNRR GSRVWLGTFD TAIEAAKAYD RAAFKLRGSK  240
AILNFPLEAG KSDPQPKPAA VVERKRRREV EVKPEPVVVK KEKVTVSEEA VSYIKDMPLT  300
PSSWKAAYWD SDSDMKGIFN VPPLSPLSPH PAMGFSQLMV V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264268RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-68ERF family protein