PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0197961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 219aa    MW: 24433.2 Da    PI: 4.9444
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0197961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.62.8e-153898357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WF+N +a+e++
  RcHm_v2.0_Chr7g0197961 38 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLkqygQIEDKNVFFWFKNLKARERQ 98
                            8****************96569*************************************97 PP
2Wus_type_Homeobox91.58.1e-303799364
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WF+N kaRerqk
  RcHm_v2.0_Chr7g0197961 37 SNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKQYGQIEDKNVFFWFKNLKARERQK 99
                            79***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MEPRTLQLME LQTQQQMELQ AQQPTEEGGS IQAAGSSNRW APTPPQLRIL KGLYYDKGFK  60
YPTPEQIQEI CLHLKQYGQI EDKNVFFWFK NLKARERQKL KEFRNVRVGG SLDLNFGSTS  120
STDDGRSIDL NFGSTGSTST DRSIDLNFGS RVGYGVDGSI MEQRGEYHQE IETLPLFPMH  180
GEDIFGNMKT TSEGGSGYGG GSRISLELSL NSYGNADIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-21WOX family protein