PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0187871

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 713aa MW: 79989.4 Da PI: 4.8266

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0187871	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.2e-52	9	143	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k ePwdLpk ++k++++ew+fF++rd+ky++g+r+nrat++gyWka RcHm_v2.0_Chr7g0187871 9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-QVIPEIDVCKREPWDLPKlsMIKSDDQEWFFFCPRDRKYPNGHRSNRATDAGYWKA 94 699**********************999.99***********5458899999************************* PP NAM 86 tgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyr 127 tgkd++++s+ ++ lvg+kktLvfy+grapkge+t+W+mheyr RcHm_v2.0_Chr7g0187871 95 TGKDRTIKSRqfksatnNTGLVGMKKTLVFYRGRAPKGERTSWIMHEYR 143 *****988776665566*************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence
MAVLSMESLP LGFRFRPTDE ELINHYLRLK INGRHSEVQV IPEIDVCKRE PWDLPKLSMI 60 KSDDQEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQFKSAT NNTGLVGMKK 120 TLVFYRGRAP KGERTSWIMH EYRPTQKELD GTAPGQCAFV LCRLFHKPEE KSEVLKYDEV 180 DQPGLSPTTS PDETSSDIVQ ESATPDMKGG KESEGISSWN DSFDHMTPDT LTVPPNDSYM 240 ASDVEVYGPE DTIFPGHYHL PGEVGFYDPN EPTIDCKIFS PFNAELDYVG SPLEFGNYNN 300 GSHFLDGTCE QDVYLPEVFD EFGNKQYESS CEDSTSQKNL VGVSEAYLSD HSFMLQAIPP 360 ENLSLNASWG YADTKMTERY LDMRARGLSN EQFDTSYQAE APASIYDHKP RMENIGYPGN 420 SYADSAVSNN LDESTNWKNG DNHSSDQVDR PRIMIRSRLP QERPNSNFLN QGEACRRIRL 480 AVLSNHSKEE DEGHSIITEA RETVQESLTS DEREEVHAIN DEEEVTSRDY SANNDSHLVG 540 KTGISCNTRQ PPEASNSDKP VTQGTAPRRN DLAMTSSPGS VADSNVRDTK HGQEDEVESS 600 IIEACEAIEK TPNLNKQEVE CHPLKLDASR KIAEEPSTTL IDEKKKTTEE VATKIRSRTG 660 GNDNSLHSSH IGTSVRSKAA ASKYHGLIIF IISVGIPLVL TMFIAFSGIW ISH

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence

MAVLSMESLP LGFRFRPTDE ELINHYLRLK INGRHSEVQV IPEIDVCKRE PWDLPKLSMI  60
KSDDQEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQFKSAT NNTGLVGMKK  120
TLVFYRGRAP KGERTSWIMH EYRPTQKELD GTAPGQCAFV LCRLFHKPEE KSEVLKYDEV  180
DQPGLSPTTS PDETSSDIVQ ESATPDMKGG KESEGISSWN DSFDHMTPDT LTVPPNDSYM  240
ASDVEVYGPE DTIFPGHYHL PGEVGFYDPN EPTIDCKIFS PFNAELDYVG SPLEFGNYNN  300
GSHFLDGTCE QDVYLPEVFD EFGNKQYESS CEDSTSQKNL VGVSEAYLSD HSFMLQAIPP  360
ENLSLNASWG YADTKMTERY LDMRARGLSN EQFDTSYQAE APASIYDHKP RMENIGYPGN  420
SYADSAVSNN LDESTNWKNG DNHSSDQVDR PRIMIRSRLP QERPNSNFLN QGEACRRIRL  480
AVLSNHSKEE DEGHSIITEA RETVQESLTS DEREEVHAIN DEEEVTSRDY SANNDSHLVG  540
KTGISCNTRQ PPEASNSDKP VTQGTAPRRN DLAMTSSPGS VADSNVRDTK HGQEDEVESS  600
IIEACEAIEK TPNLNKQEVE CHPLKLDASR KIAEEPSTTL IDEKKKTTEE VATKIRSRTG  660
GNDNSLHSSH IGTSVRSKAA ASKYHGLIIF IISVGIPLVL TMFIAFSGIW ISH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-117	NAC family protein