PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0187261

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 449aa MW: 50582.5 Da PI: 7.1887

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0187261	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39	1.4e-12	289	334	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+r+N++f Lr +P+ +++Ka+ L AveYI++L RcHm_v2.0_Chr7g0187261 289 NHVEAERQRRERLNHRFYALRAAVPNV-----SRMDKASLLADAVEYINNL 334 699*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MGEIISSCSS PYNVYPETTS ATLLQQRLQF ILQNRPETWV YSIFWKASKD SNDDNGVSLS 60 WAGGHFRGIR DFSSKKSSIQ NSDNNYRPRF GMVNREIEAL CHDDMDSERF EDINGDVTDS 120 EWFYFYTVSL TQSFAAGHNG YSNILGRVHS SSAFIWLAGD AEFQFYECER VKEARMHGIR 180 TLVCVATYSG VLEVASLDVI KEDWGFVQQA KSLFGISDSN STQGSQEAHV HVPLPENGLM 240 FSATQKQSNT HGGSSSDSGP SENIENNRSK KRGRSSSHVN GRRESPPLNH VEAERQRRER 300 LNHRFYALRA AVPNVSRMDK ASLLADAVEY INNLKTKIDK LEAKIQAQTK IPKVGSTNSK 360 SYRASAVMEV DVKFVGSEAM IRVRSTDNED YPYARLMNAL KDLELHIYHA SISSVKEFML 420 QDVVARVPFG FTSEEAMRTA IIKRLSNFP

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MGEIISSCSS PYNVYPETTS ATLLQQRLQF ILQNRPETWV YSIFWKASKD SNDDNGVSLS  60
WAGGHFRGIR DFSSKKSSIQ NSDNNYRPRF GMVNREIEAL CHDDMDSERF EDINGDVTDS  120
EWFYFYTVSL TQSFAAGHNG YSNILGRVHS SSAFIWLAGD AEFQFYECER VKEARMHGIR  180
TLVCVATYSG VLEVASLDVI KEDWGFVQQA KSLFGISDSN STQGSQEAHV HVPLPENGLM  240
FSATQKQSNT HGGSSSDSGP SENIENNRSK KRGRSSSHVN GRRESPPLNH VEAERQRRER  300
LNHRFYALRA AVPNVSRMDK ASLLADAVEY INNLKTKIDK LEAKIQAQTK IPKVGSTNSK  360
SYRASAVMEV DVKFVGSEAM IRVRSTDNED YPYARLMNAL KDLELHIYHA SISSVKEFML  420
QDVVARVPFG FTSEEAMRTA IIKRLSNFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	300	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	3e-64	bHLH family protein