PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0185551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 284aa    MW: 31727.3 Da    PI: 4.9523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0185551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08174221455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR +iN+++  L++++P +    sk +  a +L + ++Y++sLq
  RcHm_v2.0_Chr7g0185551 174 SHSLAERVRRGKINERLRCLQDIVPGC----SKTMGMAVMLDEIINYVQSLQ 221
                             8*************************9....788*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MAQFTEDLKP SFPFLDIEPS SILINQYADQ FNHLGVLDYS SLNHFQGYMP FSSDNFFGNS  60
QGPEFPGTLV ENFPAGFVQQ NSSSDNNLQN DEASAAQCLV AAGNPEFQES KKRIAMEMSE  120
SSSGVSNPSV SKTGIKRKNS LGRGKRVKIS NEEEDEKPKE VVHVRARRGQ ATDSHSLAER  180
VRRGKINERL RCLQDIVPGC SKTMGMAVML DEIINYVQSL QNQVEFLSMR LTAASSFHDF  240
NTETEDAMET MQRAKELERV KIEAGYGGVV DSSFQYSSTN YWSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.12e-59bHLH family protein