PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0181751

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 354aa MW: 40093.2 Da PI: 7.9226

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0181751	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.5e-56	23	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yL+kkv ++++ + ++i +vd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatg RcHm_v2.0_Chr7g0181751 23 LPPGFRFHPTDEELISHYLHKKVIDSNFGC-KAIGDVDLNKSEPWDLPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATG 108 79***********************999.88***********99999****************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 kdke+++ +++lvg+kktLvfy grapkgek++Wvmheyrle RcHm_v2.0_Chr7g0181751 109 KDKEIYK-GKSLVGMKKTLVFYGGRAPKGEKSNWVMHEYRLE 149 ***.999***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MMQEMEKFAV QAGTFREDDQ IDLPPGFRFH PTDEELISHY LHKKVIDSNF GCKAIGDVDL 60 NKSEPWDLPY KAKMGEKEWY FFCVRDRKYP TGLRTNRATE AGYWKATGKD KEIYKGKSLV 120 GMKKTLVFYG GRAPKGEKSN WVMHEYRLEG KFSVHNLPKS ARNEWVICRV FEKSAGGKKI 180 HITGLVNSGP HGTEMGSSGL PPLLDSAPYN GAKTRPASES NYVPCFSNHE SIDSQRNQGI 240 VDYINSNPLF SVSSNPLNNN NAFPRVTYQN SLCSAPVSSA NFQFPSSVLM QDHLRALLEN 300 NVSFMRQNFK TERDMVSVSQ ETGLTTDVNP EISSVMPNPE MGRRPFDDQD NFWM

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MMQEMEKFAV QAGTFREDDQ IDLPPGFRFH PTDEELISHY LHKKVIDSNF GCKAIGDVDL  60
NKSEPWDLPY KAKMGEKEWY FFCVRDRKYP TGLRTNRATE AGYWKATGKD KEIYKGKSLV  120
GMKKTLVFYG GRAPKGEKSN WVMHEYRLEG KFSVHNLPKS ARNEWVICRV FEKSAGGKKI  180
HITGLVNSGP HGTEMGSSGL PPLLDSAPYN GAKTRPASES NYVPCFSNHE SIDSQRNQGI  240
VDYINSNPLF SVSSNPLNNN NAFPRVTYQN SLCSAPVSSA NFQFPSSVLM QDHLRALLEN  300
NVSFMRQNFK TERDMVSVSQ ETGLTTDVNP EISSVMPNPE MGRRPFDDQD NFWM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-142	NAC family protein