PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0310101

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 430aa MW: 46836 Da PI: 5.4813

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0310101	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.3e-10	271	319	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq RcHm_v2.0_Chr6g0310101 271 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 319 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MGSHDNEDMG FQHRNEGTLN CPSSGMSTNP QPEKVSRMAM SSGSIFKPSN APDPFFGSGW 60 DPLVSLSQSD NFGGSSVASQ SEFTNPPYPI AMETQGMSST SHLVQYPSDS SYVEMVPKLP 120 CFGSGSFSEM VGSFGLPECA GISNPGCVAN YNPNRDGGID RTSTMGTQSL DDRQVSEEGA 180 LGSSPNGRRR KRVPESSPNK NAEGELNKDM SGESSDYLKE QDEKKTKLEE NTAANLRGKQ 240 ASKQTKENSQ SGDAAKDSYI HVRARRGQAT NSHSLAERVR REKISERMRL LQELVPGCNK 300 ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPEVNIDI ERILSKDIMN PRNGSGAIFG 360 FSPGMNSSHP YPHGIFQGNL QNMPITAPQF PSLPQTVLDN ELQGLFHMGF DSSSNIDCLG 420 QNASRMKPEQ

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MGSHDNEDMG FQHRNEGTLN CPSSGMSTNP QPEKVSRMAM SSGSIFKPSN APDPFFGSGW  60
DPLVSLSQSD NFGGSSVASQ SEFTNPPYPI AMETQGMSST SHLVQYPSDS SYVEMVPKLP  120
CFGSGSFSEM VGSFGLPECA GISNPGCVAN YNPNRDGGID RTSTMGTQSL DDRQVSEEGA  180
LGSSPNGRRR KRVPESSPNK NAEGELNKDM SGESSDYLKE QDEKKTKLEE NTAANLRGKQ  240
ASKQTKENSQ SGDAAKDSYI HVRARRGQAT NSHSLAERVR REKISERMRL LQELVPGCNK  300
ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPEVNIDI ERILSKDIMN PRNGSGAIFG  360
FSPGMNSSHP YPHGIFQGNL QNMPITAPQF PSLPQTVLDN ELQGLFHMGF DSSSNIDCLG  420
QNASRMKPEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	227	RRRKRVPESSPNKNAEGELNKDMSGESSDYLKEQDEKKTK
2	189	228	RRRKRVPESSPNKNAEGELNKDMSGESSDYLKEQDEKKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	4e-87	bHLH family protein