PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0302551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 914aa    MW: 100600 Da    PI: 5.0341
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0302551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.1e-24145246199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv  ++L++gD+v
  RcHm_v2.0_Chr6g0302551 145 FCKILTASDTSTHGGFSVPRRAAEKLfppldftMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGTKRLRAGDSV 229
                             99*********************999*****954444.4.48********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   ++++ +l+v+v+r+
  RcHm_v2.0_Chr6g0302551 230 LFI--RDEKSQLLVGVRRA 246
                             ***..4577778*****97 PP
2Auxin_resp1132.8e-37271354183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+++s+F+++YnPra++seFv+++ k++kal+ +++svGmRf m+fete+s +rr++Gt+v +sd+dp+rWp+SkWr+L+
  RcHm_v2.0_Chr6g0302551 271 AAHAAANRSPFTIFYNPRACPSEFVIPLVKFQKALYgTQLSVGMRFGMMFETEESGKRRYMGTIVNISDFDPLRWPGSKWRNLQ 354
                             79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    
MEEKMRIGGG LLSGAQSSIL EEMKLLKELQ DHSGSRKAIN SELWHACAGP LVCLPQVGSL  60
AYYFPQGHSE QVAVSTKRMA TSQIPNYPNL PSQLLCQVQN VTLHADKETD EIFTQMCLKP  120
VNSEKDVFPV PDFGLKPSKH PSEFFCKILT ASDTSTHGGF SVPRRAAEKL FPPLDFTMQP  180
PTQELVVRDL HDNTWTFRHI YRGQPKRHLL TTGWSLFVGT KRLRAGDSVL FIRDEKSQLL  240
VGVRRANRQQ TTLPSSVLSA DSMHIGVLAA AAHAAANRSP FTIFYNPRAC PSEFVIPLVK  300
FQKALYGTQL SVGMRFGMMF ETEESGKRRY MGTIVNISDF DPLRWPGSKW RNLQVEWDEP  360
GCCDKQNRVS SWEVETPESL FIFPSLTSSL KRPFHSGYLG AETEWANMIK RPFIRVPEIG  420
NMNSFPYPMS NLCSEQLVNM LLKPQVSQAG TLSALQQESA ANGGQLEDMQ VMQAKMNQKN  480
LVYCSEGMSL QSQNPSQLNT TAKFGSQTPV GVNTEKTKLE PDLSTDRLSQ LSSSGQGNEE  540
KLASGIAGSP YNNACVNQNQ GQLQASPRPM QQPMESLLYH SQQTDLPQSD FNSANGSLPS  600
LDNDECMFYQ PFAGILRSPG PLSAYGLQDC PSVLTEANNF SPTSMGQEMW DNSLSRLLPQ  660
VDQLTSSHQD PSTFNSIPNS GSLRDLSDES NNQSGVYGCP SVDVCTGVSN IVADPSVTST  720
IMDEFSKLKH ADFQNPSECL VGNLSSSQDL QSQITSASLG DSHAFSRQEL ADNSGGTSSS  780
NVDLDESSLL QNSWHQVVPP VRTYTKVQKA GSVGRSIDVT SYTNYEELCS AIECMFGLEG  840
LLNDPRGSGW KLVYVDYEND VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS  900
AAALQGIGMN TTVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein