PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0300721

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 456aa MW: 48018.9 Da PI: 8.956

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0300721	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RcHm_v2.0_Chr6g0300721 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP
2	zf-C2H2	15.9	3.7e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ RcHm_v2.0_Chr6g0300721 134 WKCERCSKKYAVQSDWKAHMKTC 156 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MGDLDLDNSS SLVGSTASGE ATFSEPPAKK KRNLPGMPDP EAEVIALSPK TLMATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TTEVRKRVYV CPETSCVHHN PTRALGDLTG 120 IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YKCDCGTLFS RRDSFITHRA 180 FCDALAEESA KAQTLGSSQL ANPNPSPNAG KAVVVASPPP PPLTPSNNVV SPALSIQSSE 240 FPENPVGLSP PPPATTCLTS TTTAISTTAT TTTSTGNCSN TSTSVFASIF APSTASQTSA 300 AANSSYSNIV SSSAIPSASA MEPTSLSLST SLYLSNNGST LFPTADQQDH RQYVASPQAP 360 AMSATALLQK AAQMGAAATS GSFLRGFGLA TSSSPPQAQD STTSLQWSNN SHSHQHKRDG 420 SGGAAATVAA GLGASSALLT DLMMGPPVPF GVIISP

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MGDLDLDNSS SLVGSTASGE ATFSEPPAKK KRNLPGMPDP EAEVIALSPK TLMATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TTEVRKRVYV CPETSCVHHN PTRALGDLTG  120
IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YKCDCGTLFS RRDSFITHRA  180
FCDALAEESA KAQTLGSSQL ANPNPSPNAG KAVVVASPPP PPLTPSNNVV SPALSIQSSE  240
FPENPVGLSP PPPATTCLTS TTTAISTTAT TTTSTGNCSN TSTSVFASIF APSTASQTSA  300
AANSSYSNIV SSSAIPSASA MEPTSLSLST SLYLSNNGST LFPTADQQDH RQYVASPQAP  360
AMSATALLQK AAQMGAAATS GSFLRGFGLA TSSSPPQAQD STTSLQWSNN SHSHQHKRDG  420
SGGAAATVAA GLGASSALLT DLMMGPPVPF GVIISP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-118	C2H2 family protein