PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0299681
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 655aa    MW: 72561.6 Da    PI: 6.4237
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0299681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.91.7e-26201254155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr++W+ +LH++Fv av++L G++kA+Pk+il+lm+ + Lt+e+v+SHLQk+Rl
  RcHm_v2.0_Chr6g0299681 201 KPRVVWSVDLHRKFVAAVNKL-GIDKAVPKKILDLMNEDKLTRENVASHLQKFRL 254
                             79*******************.********************************8 PP
2Myb_DNA-binding34.54.8e-11203253148
                             TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                             r  W+ +++ ++v av++lG +   +k+I   m+  ++t++++ s++qk++
  RcHm_v2.0_Chr6g0299681 203 RVVWSVDLHRKFVAAVNKLGIDkaVPKKILDLMNeDKLTRENVASHLQKFR 253
                             678********************************99************97 PP
3Response_reg80.94.2e-27201281109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vlivdD+ + +++l+++l k +y +v++++++  alell+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++++g+ e+
  RcHm_v2.0_Chr6g0299681  20 VLIVDDDVTCLRVLETMLHKCQY-HVTATSHAFTALELLRENRnkFDLVISDVQMPDMDGFKLLELVGL-EMDLPVIMLSSNGDREL 104
                             8**********************.***************999889*******************87754.558************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + +  Ga d+l+Kp+ ++el +
  RcHm_v2.0_Chr6g0299681 105 VMKGVTHGACDYLVKPVRIQELKN 128
                             *********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    
MTIEAVLDDQ RDQFPLGMRV LIVDDDVTCL RVLETMLHKC QYHVTATSHA FTALELLREN  60
RNKFDLVISD VQMPDMDGFK LLELVGLEMD LPVIMLSSNG DRELVMKGVT HGACDYLVKP  120
VRIQELKNIW QHVVRRKKVD SKDQTNSGNQ DKSHIGNCGG GMANLDQNVK LNKKRKDQNE  180
DEDDNRDEDG YDNDDPSTQK KPRVVWSVDL HRKFVAAVNK LGIDKAVPKK ILDLMNEDKL  240
TRENVASHLQ KFRLYLKRIS CVANQQANMM AAIGSSDSSY LRMGSFNGVR NYHALTGPGQ  300
FNNTGFRSMP LNGMIGRVNT PAGLGQHCLP SSGSIKLGHG QHPSNSILDQ GLFPGNRNGS  360
MFQGNLELDQ RHSKGATSVR DLSAGINGTP VFPIPGGLSD AKLIVSRSSD AVGLTDDLIL  420
RHPRDFEGGR EYVNQSSLSV APLKSEFSAP FLDHGRLNDS WSSAAQSSAF RSNSFPSSNT  480
RDNIPVGMSS QLRNCQFDVP SINSVSSQLQ DPRTEMLIQP SAISSTAEQI IDSDPTQGWV  540
WMDHKQDSPY HHSDAISSSM NSLMPANIPV AFDQNLDSKG TTLQRNMDFN SIGQSNFLDP  600
LLIKFDEVER SVEASMNLKP GYTMDQRKPQ GGLVSNNYGL LDDLVSAMTN QLEKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135176RRKKVDSKDQTNSGNQDKSHIGNCGGGMANLDQNVKLNKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-120ARR-B family protein