PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0299531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 325aa    MW: 36909.3 Da    PI: 6.0588
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0299531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.79.2e-18896195
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                            f+kv++ps+v    +l lp +f+ +h g   +++t++lede+g +++  +   +++ +  l++GW++F   ++L egD++vF+ ++ +e
  RcHm_v2.0_Chr6g0299531  8 FVKVMLPSHVAGGFWLGLPSTFCHKHIGT--SDQTIILEDETGDKFKTAY--LGHKMG--LSAGWRGFSIHHHLLEGDVLVFQKVRANE 90
                            89*********************999655..5679***************..999866..9**********************777788 PP

                            E..EEE CS
                      B3 90 felvvk 95
                            f+ ++ 
  RcHm_v2.0_Chr6g0299531 91 FKVNIY 96
                            866555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MPVKCPHFVK VMLPSHVAGG FWLGLPSTFC HKHIGTSDQT IILEDETGDK FKTAYLGHKM  60
GLSAGWRGFS IHHHLLEGDV LVFQKVRANE FKVNIYMIQS FNCLFRSMAV YCLILRVTFE  120
EEDMFNYIDN YEAGAESEDD IDPEFFKGAG LSESSVTCFK EVTCIEKFKI IFNGCNILVP  180
KLVLKKYYEL CRSQNSYLHE NLVESLNSQL VAGLISETVN IADAIKFCKI TTEESEFSTW  240
DKTLQACEML GMNVGFMRSR ASKLASLAAE SKTYKDARLA REQEEAEFRV RLADFLKEKD  300
KADREGSEKS VQVATSFKQV TNVPW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-31B3 family protein