PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0292831
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family CO-like
Protein Properties Length: 389aa    MW: 43192.1 Da    PI: 6.0976
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0292831genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.2e-072165240
                zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                            ++r C+ ++   + l+C+ ++  lC +C  e H+       Ht++
  RcHm_v2.0_Chr6g0292831 21 KKRLCDYCGVSMALLYCRADSAKLCFSCDKEVHSAnqlfikHTRS 65
                            7899*****988*********************668899999876 PP
2zf-B_box28.72.7e-0965106339
                zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                              + C+ ++e ++++fC + ++ lC++C  e H +      H +
  RcHm_v2.0_Chr6g0292831  65 SQLCDACDEAPASIFCSTESSVLCQNCDWERH-NlssatvHVR 106
                             678***************************99.5466666655 PP
3CCT64.43.3e-22345387143
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                             Re al+RYkeK+ktR+++K+irYesRK++AesR R+KGrF+k 
  RcHm_v2.0_Chr6g0292831 345 RESALSRYKEKKKTRRYDKHIRYESRKVRAESRTRIKGRFAKI 387
                             99***************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    
MNGFKEEDEP GHQNMGPKMN KKRLCDYCGV SMALLYCRAD SAKLCFSCDK EVHSANQLFI  60
KHTRSQLCDA CDEAPASIFC STESSVLCQN CDWERHNLSS ATVHVRRPVE GFTGNPGLNE  120
LLAFVGFENL DKKGLVVSEE SSGGGGGFDG SGLDGSLGLS EGFSDFLVWE TPSVVSLDDL  180
IVSSPAHKFQ AMGVPPLPKN RNAKCGRHKE EILSQLRVVA KSEPNLMNED VDLNSFMRFQ  240
SPETEHNMQS GGFCTNFEQD AEPLAFPAYE AQESEANHYD KSSSQDFFPK TLQRSYLQDC  300
SMVPDLNSNN DGTASHASDG FGGQMNSEAS SAFPKVPSHE CTLNRESALS RYKEKKKTRR  360
YDKHIRYESR KVRAESRTRI KGRFAKIDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-88CO-like family protein