PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0288281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 159aa    MW: 18214.6 Da    PI: 7.7608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0288281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-193383255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            +y+GVr+++ +g+++AeIrd +    +  r +lg+f ta+eAa+a+++a+ +++g
  RcHm_v2.0_Chr6g0288281 33 KYRGVRRRP-WGKFAAEIRDSTR---QgVRLWLGTFNTAKEAARAYDKAAFSMRG 83
                            8********.**********322...24*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MDSLIHIQLV LSDMKEDPSK SKKIEDEGQK YVKYRGVRRR PWGKFAAEIR DSTRQGVRLW  60
LGTFNTAKEA ARAYDKAAFS MRGPLAILNF PSEHGFVYVD SAPTSSSFTA SSSTLHNMEV  120
TMRTEPRKEV FVFEYLDDKV LEELLDFENN SKRVELGVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-31ERF family protein