PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0288231
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 263aa    MW: 29634.2 Da    PI: 5.4706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0288231genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18107157255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +l+g
  RcHm_v2.0_Chr6g0288231 107 SYRGVRRRP-WGKYAAEIRDSTR---HgVRVWLGTFDSAEAAALAYDQAAFALRG 157
                             69*******.**********422...25*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MEMESYSLFQ FSNPSQFSPE SSFGSSLDSF SWDDALLDTF NNDMLNFPPF NTNHEPQDLL  60
LFDAVAKEPA LVAEETHWFG GAVKEEEVTS NSNAFQVFEG KPRKEKSYRG VRRRPWGKYA  120
AEIRDSTRHG VRVWLGTFDS AEAAALAYDQ AAFALRGPLA VLNFPVEVVR ESLQEIKCRY  180
DEGCSPIVAL KRRHSTRRKS LCKKNSCNKE QGKVKSSIPS KVTKNKTQEN VVTQNVVVLE  240
DLGAEYLEEL LYQSSCESAS FSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-40ERF family protein