PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0274761
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 447aa    MW: 50536.5 Da    PI: 4.4323
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0274761genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.31.3e-4861341129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             lppGfrF+Ptd elv++yLk+kv gk+l + +vi+evdiyk+ PwdLp k + ++++ +wyfF++r+kkya+g r nrat+ gyWk+
  RcHm_v2.0_Chr6g0274761   6 LPPGFRFNPTDVELVQYYLKRKVMGKRLLV-KVIAEVDIYKWAPWDLPdKsCWRSGDLKWYFFCPREKKYASGARMNRATDCGYWKT 91 
                             79*************************999.99**************96446777888***************************** PP

                     NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             tgkd++vl  ++e+vg  ktL+f++grap+g++tdWv+heyrle
  RcHm_v2.0_Chr6g0274761  92 TGKDRSVLY-SNEVVGWIKTLIFHTGRAPRGQRTDWVLHEYRLE 134
                             *********.8999****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    
MGKSSLPPGF RFNPTDVELV QYYLKRKVMG KRLLVKVIAE VDIYKWAPWD LPDKSCWRSG  60
DLKWYFFCPR EKKYASGARM NRATDCGYWK TTGKDRSVLY SNEVVGWIKT LIFHTGRAPR  120
GQRTDWVLHE YRLEDKKLVD MGVPQDSYVL CMVFQKDGIG PRSNKQYGAP FKEEDWTDDE  180
VETDVVPHVN MPEPNLGHAN IHQPEPHLIH SNMPEPDLVQ ANIPDQVPVN SNITEPDLVY  240
GNMPDPYLVY PNMPESDLDY ANMPQSDLGY ANMSEPSLVL PSNYNSSIAT RTNSRESCVS  300
DILPPSCNVL QSVSSNYVTT EKPHVSTDDD IMSMLNCFTE EGTFSMSDID KNELDNLIYS  360
GDANPIADFE RHDDAHEDRG GLSKNGYNIP NGAMSGAPGE NEPYLELVDL DKPLNGNNSL  420
FPMISPPHTF LGETPYEDSL FPWSDDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.33e-91NAC family protein