PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0272531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 381aa    MW: 43893.2 Da    PI: 9.4645
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0272531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-063562126
                            --S---SGGGGTS..--TTTTT-SS-SS CS
                 zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHg 26
                            +k ++C  + ++   tC++G +C+F+H+
  RcHm_v2.0_Chr6g0272531 35 WKVAICGEYVKSRykTCSRGRTCNFIHC 62
                            799*******99999************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MTSHLLPTWL WLFSTRQAVS VSLLISCDFI NVTRWKVAIC GEYVKSRYKT CSRGRTCNFI  60
HCFRNPGGDY EWADSDRPPQ KYWVEKMVAL FGYSDAYEKQ MMEDNSGQLR NSSKKSMTDS  120
QRFVVQRSSS RDGSCSSFTG SSRRYDNENN APKGTGHHRP SGEENAYLKD FNHRKNRKYC  180
IESDGELLHM DGDTDRDIYH GHRRKSARQE NGDHKNKTYE TDSDGHLLKR GQSRVTEHGS  240
TRKSSSQRRK AGVHHDYGDC EKKVHEVGGD WSTRDRESYH DCRRSSGHKR KARYADNHKE  300
RKSKAHDSDG EWSDSNRKGD EPHIIRKSLV HIGNASNSLK QQESSARSCT AELSEEMLDK  360
DAEKDSSHAS KRSKHWDKSG R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.19e-41C3H family protein