PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0272211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 485aa    MW: 55125.3 Da    PI: 6.676
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0272211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.61.3e-90964791373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             lv+ Ll  A+av++++ + a + L++l + +s  gd++qR++ayf+ +Laarl+   s  y+ ++ ++t+    +ee+ a+++++ v
  RcHm_v2.0_Chr6g0272211  96 LVHMLLITATAVNENNVSSALENLTELYKSVSLCGDSVQRVVAYFADGLAARLLTRKSPFYDVISKEPTH----EEEFVAFTALYRV 178
                             6899***************************************************9*****999998886....78889999***** PP

                    GRAS  88 sPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLak 167
                             sP+++f+h+taNqaI ea+e+e     + +HiiDfd+s+G+QWp+L+q+L+++   ++  slRiTg+g+    s +el+et++rL +
  RcHm_v2.0_Chr6g0272211 179 SPYYQFAHFTANQAIIEAFEKEedknnRSLHIIDFDVSYGFQWPSLIQSLSEKGssSSRISLRITGFGR----SLDELRETENRLLS 261
                             ********************9988777789**********************99534455*********....9************* PP

                    GRAS 168 fAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                             f + + ++ fef+ l    l+  +l +Lr +++E++aVnlv++l +l  ++++++    ++Lk v  l+P +v +veqe +++  sF
  RcHm_v2.0_Chr6g0272211 262 FSKGCrNLVFEFQGL----LQGSNLINLRKNRNETIAVNLVFHLNSLK-NNMKIS----DTLKSVHLLNPSIVMLVEQEGSRSPRSF 339
                             **98648*******8....77788889*****************9997.455555....5*************************** PP

                    GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqakl 339
                             l rf+e+l+y++a+fdsl+  lp es er ++E+  lg+ei++++   + +  r+ +++ e+W++r+e+ GF+ ++ls+k   qa+l
  RcHm_v2.0_Chr6g0272211 340 LPRFMESLHYFAAMFDSLDDCLPLESVERLSIEKNHLGKEIKSMLNYDHIQeDRKTEKSTETWKARMESHGFEGINLSSKSKIQARL 426
                             *********************************************9998772455566789************************** PP

                    GRAS 340 llrkvk...sdgyrveee...............sgslv.lgWkdrpLvsvSaW 373
                             ll+         ++ e++               +g  + lgW+dr L++vSaW
  RcHm_v2.0_Chr6g0272211 427 LLKIRThycPLQFEGESSngsstaagfrvferdDGRTIsLGWQDRYLLTVSAW 479
                             *97543111112333322444444555555555555556************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    
MEDIDEEGDE LLNLSLAIVT NSGGERMKKR KRRENTGDLS SSSYEGCEGK IFRLLQMREQ  60
MLKLDHKKKG GGGGHNYCND NNIYCSVDED GKGLQLVHML LITATAVNEN NVSSALENLT  120
ELYKSVSLCG DSVQRVVAYF ADGLAARLLT RKSPFYDVIS KEPTHEEEFV AFTALYRVSP  180
YYQFAHFTAN QAIIEAFEKE EDKNNRSLHI IDFDVSYGFQ WPSLIQSLSE KGSSSSRISL  240
RITGFGRSLD ELRETENRLL SFSKGCRNLV FEFQGLLQGS NLINLRKNRN ETIAVNLVFH  300
LNSLKNNMKI SDTLKSVHLL NPSIVMLVEQ EGSRSPRSFL PRFMESLHYF AAMFDSLDDC  360
LPLESVERLS IEKNHLGKEI KSMLNYDHIQ EDRKTEKSTE TWKARMESHG FEGINLSSKS  420
KIQARLLLKI RTHYCPLQFE GESSNGSSTA AGFRVFERDD GRTISLGWQD RYLLTVSAWH  480
CHCVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833KKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.15e-56GRAS family protein