PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0270541
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 330aa    MW: 36451.6 Da    PI: 4.8838
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0270541genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.5e-16187223135
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++Cg ++  Tp +Rrgp+g+++LCnaCGl+++ kg+
  RcHm_v2.0_Chr6g0270541 187 CQHCGISEksTPAMRRGPNGPRSLCNACGLRWANKGT 223
                             *****99999************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MEAVNVQPIQ ARRPYEGEES EGDYVAMNNG AGAIPSQVTM SRCSNSTRTS ELTIAFEGEV  60
YVFPAVTPDK VQAVLLLLGG RDIPGSDIPS SVPSSGFSIQ QNNRGIGDIS RNSKLSRRFA  120
SLVRFREKRK ERCFDKKIRY SCRKDIAERM HRKNGQFASL KDPSKLVAGN CDSSDSTSCP  180
ESVLRRCQHC GISEKSTPAM RRGPNGPRSL CNACGLRWAN KGTLRDLTKS GRDVSFDQNE  240
LESPEENKPI ALDAEVPPLR LGDQDMLETA EAATNQVSIQ MENSSVNLDE QENLEELANA  300
SGTEFEIPAN FEEQVVDFYD CNMETHWGGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-63GATA family protein