PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0268121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 417aa MW: 47973.1 Da PI: 4.9113

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0268121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.3	1.9e-11	77	138	1	63
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCk 63 +fYn Y+ GFs+rk k+ k++ + i++r++vCs++g+r++ + + +++++ ++Ck RcHm_v2.0_Chr6g0268121 77 RFYNYYSLAKGFSMRKYKQDKNRAGTLIIRRQLVCSRQGQRKQWTVL-YQPDENNPSFVCSCK 138 5*****************************************98877.778888888888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MESGLRYSEH KYYDSLMDLN SEEGSINGSS DADMENTDFT KEEDMQDFTL FRGKPYQDLT 60 LDDLKEVEFN TIEEVDRFYN YYSLAKGFSM RKYKQDKNRA GTLIIRRQLV CSRQGQRKQW 120 TVLYQPDENN PSFVCSCKLF ESDGIPCCHI FAVIKNEQIT TLPESLVNKR WTKEAMVRKT 180 LSTFKEVPDK YVQIARYGEL MSQCAKFCHR ASYSDEGYDE MREALNLLTI RSEEYSAGIL 240 DNLEDEHFEG LHPNVIKDPV VCRTKGSKHT NAECREHFSS NDQPKVGGKC TKCQQRGHNK 300 RTCGRENKLG ASDAKSPTPT KVVSVTCSEG LEDDVYDDGT SDVNFDEFKD GEFTKRQSSN 360 LMRHVEEVRP FEFFAGYDIS ENEGSNTNCT RVPNFFQHFR PFPNDEGYDG ASHSDDN

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MESGLRYSEH KYYDSLMDLN SEEGSINGSS DADMENTDFT KEEDMQDFTL FRGKPYQDLT  60
LDDLKEVEFN TIEEVDRFYN YYSLAKGFSM RKYKQDKNRA GTLIIRRQLV CSRQGQRKQW  120
TVLYQPDENN PSFVCSCKLF ESDGIPCCHI FAVIKNEQIT TLPESLVNKR WTKEAMVRKT  180
LSTFKEVPDK YVQIARYGEL MSQCAKFCHR ASYSDEGYDE MREALNLLTI RSEEYSAGIL  240
DNLEDEHFEG LHPNVIKDPV VCRTKGSKHT NAECREHFSS NDQPKVGGKC TKCQQRGHNK  300
RTCGRENKLG ASDAKSPTPT KVVSVTCSEG LEDDVYDDGT SDVNFDEFKD GEFTKRQSSN  360
LMRHVEEVRP FEFFAGYDIS ENEGSNTNCT RVPNFFQHFR PFPNDEGYDG ASHSDDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.2	2e-08	FAR1 family protein