PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0266631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 334aa    MW: 38820.5 Da    PI: 4.5509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0266631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.81.8e-2241382128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                             p G+rFhPtdeel+ ++L ++++  +   ++ i+e  + y   ePw    k   +   + + ++fF+kr+k ++++kr  r++ sg+
  RcHm_v2.0_Chr6g0266631   4 PIGYRFHPTDEELIGYFLYHRARMGNQFHSNEISEYsEFYGQeEPWVVWdKnggSSVDDGEPLFFFTKRKKLNPNSKRFDRKVGSGT 90 
                             89*******************98877444466888867775549****633343222245577************************ PP

                     NAM  83 Wkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             W+ + + + v ++   + + +g+++ + +  g +p+ ++ +W+m+ey+l
  RcHm_v2.0_Chr6g0266631  91 WSGQFSREVVAENrdtGCRITGMRREFRYEGGCDPE-QNNSWLMQEYEL 138
                             **9988666666554444559********9999998.899*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MGYPIGYRFH PTDEELIGYF LYHRARMGNQ FHSNEISEYS EFYGQEEPWV VWDKNGGSSV  60
DDGEPLFFFT KRKKLNPNSK RFDRKVGSGT WSGQFSREVV AENRDTGCRI TGMRREFRYE  120
GGCDPEQNNS WLMQEYELCA TDVLVLCTLK KNLRKARSST STATTSSSQT NGKKRKRIVD  180
NQPRKTKAVR SEKAETCEEQ QSTICVDLTD LEETNSESRD HQLLQVVDED YHPELYLELH  240
PDLVQSNEHL FFMEELFAPS PLNVQDPLPH LESNESQSQD QSYVSTNDQF QDHSYEDNSF  300
MSFLSTEFQH QLGEDNNFSF VSSDQFLDCN DLTW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-13NAC family protein