PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0266111

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 670aa MW: 73796.6 Da PI: 5.876

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0266111	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.9e-09	422	459	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + RcHm_v2.0_Chr6g0266111 422 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 459 664459******************************88 PP
2	BELL	126.9	7.4e-41	284	355	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k +kLls+l+eVd+rYk+y++q+q+v+ssF+a+ag g+akpYt++Al++iSrhFrcL+dai++qi RcHm_v2.0_Chr6g0266111 284 EKQELQNKLTKLLSMLDEVDRRYKHYYQQMQIVVSSFDAIAGSGAAKPYTAVALQTISRHFRCLRDAITGQI 355 689********************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MATYYTNSNN QKDGTPMLYS REPLTSSYPE TPVLPGNMMM YMNSGSYSDA LAGSSQQQNN 60 CIEVVSSVGA SDSNTQQQDV LSHLGGSRIG EQGFNAWRDS RNEMLVTNPM DGSAAILHGG 120 QNLQGQGLSL SLSSGMQVPS MSYRNPNMGF ASFLSPNPSL SSEGRNGTFR DDQPRNVEYL 180 QPSFLGGNAD SSKGDLSPYG MSSIARNVPN SKYLKAAQQL LDEVVNVQKA LKQHDREKNE 240 STNEHMMKSF KEGDDGSKNE LESGESSNPQ ESASNSSCEL SHAEKQELQN KLTKLLSMLD 300 EVDRRYKHYY QQMQIVVSSF DAIAGSGAAK PYTAVALQTI SRHFRCLRDA ITGQIRATQK 360 SLGEQGTSGS IKGVGITRLR YVDQQLRQQR ALQQLGMMQQ HAWRPQRGLP ESSVSILRAW 420 LFEHFLHPYP KDSDKIMLAR QTGLTRSQVS NWFINARVRL WKPMVEEMYK EEAGDAEMDS 480 NSSSENAPQT KKGEKRTLED GGEDMQPSAS STGTDRCSTG QFMDSKPDHY DVEMAGSTGS 540 ASFQNGTRRE AEAEFGLVKL RQGERPGMDE SSFFTDGMVQ SDRSSERFMA AYHMRELGRF 600 GSGSGVSLTL GLQHCDGGNI PISSGTPHSF VAMRDDDLYN AAASSVGSET ADFDQQHRFG 660 SSHLLRDFVV

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MATYYTNSNN QKDGTPMLYS REPLTSSYPE TPVLPGNMMM YMNSGSYSDA LAGSSQQQNN  60
CIEVVSSVGA SDSNTQQQDV LSHLGGSRIG EQGFNAWRDS RNEMLVTNPM DGSAAILHGG  120
QNLQGQGLSL SLSSGMQVPS MSYRNPNMGF ASFLSPNPSL SSEGRNGTFR DDQPRNVEYL  180
QPSFLGGNAD SSKGDLSPYG MSSIARNVPN SKYLKAAQQL LDEVVNVQKA LKQHDREKNE  240
STNEHMMKSF KEGDDGSKNE LESGESSNPQ ESASNSSCEL SHAEKQELQN KLTKLLSMLD  300
EVDRRYKHYY QQMQIVVSSF DAIAGSGAAK PYTAVALQTI SRHFRCLRDA ITGQIRATQK  360
SLGEQGTSGS IKGVGITRLR YVDQQLRQQR ALQQLGMMQQ HAWRPQRGLP ESSVSILRAW  420
LFEHFLHPYP KDSDKIMLAR QTGLTRSQVS NWFINARVRL WKPMVEEMYK EEAGDAEMDS  480
NSSSENAPQT KKGEKRTLED GGEDMQPSAS STGTDRCSTG QFMDSKPDHY DVEMAGSTGS  540
ASFQNGTRRE AEAEFGLVKL RQGERPGMDE SSFFTDGMVQ SDRSSERFMA AYHMRELGRF  600
GSGSGVSLTL GLQHCDGGNI PISSGTPHSF VAMRDDDLYN AAASSVGSET ADFDQQHRFG  660
SSHLLRDFVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-117	TALE family protein