PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0262421

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 492aa MW: 54690.5 Da PI: 7.1084

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0262421	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	65	85	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F +k +L rH+r+H RcHm_v2.0_Chr6g0262421 65 CLVCGKNFLSKKSLFRHLRSH 85 77******************9 PP
2	zf-C2H2	14.6	9.9e-05	254	276	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H+++H RcHm_v2.0_Chr6g0262421 254 FRCKLCNKTFTSYQALGGHMSSH 276 89*******************99 PP
3	zf-C2H2	14.8	8e-05	310	332	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs L Hi +H RcHm_v2.0_Chr6g0262421 310 YSCNVCDKTFSGYQALGAHILSH 332 99******************997 PP
4	zf-C2H2	12.9	0.00034	424	446	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H r+H RcHm_v2.0_Chr6g0262421 424 HQCEECKKTFPTGQALGGHKRLH 446 79*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MPTPPEALEQ AQHREVSPPL NHICDICHKG FRSGQALGGH KSMHFRESEA IITSATTSTS 60 DPICCLVCGK NFLSKKSLFR HLRSHTGNLS PRAGYNSGNS SSTVSDEPTF DDGKCDGVDS 120 GSRFDLSKTL PAGWSITRRR KRNALGTSAS DCSGSDETAG NSGLDLSPKL ELVTVDPKLE 180 AEEFSGLVML AQVCAEEASR RNLINNNQVY QNGQIEIRYV AIECKRRRLN DGYERRWSAA 240 DHYGYNCNDI DSDFRCKLCN KTFTSYQALG GHMSSHYRLK INSKDHDHAQ FNFEQHNEQH 300 SLLPQVVSTY SCNVCDKTFS GYQALGAHIL SHCKDVNDNN THNSAHNRVI KDNNVPEPRQ 360 VELHSCGVCN KEFTSYQALG GHKSSHTKYN NNNNMDRDQS NSDISTGGAE DKNERQKLYV 420 TVPHQCEECK KTFPTGQALG GHKRLHWKGP TGATAKPSQQ SSARRPLEFD LNEIPSMEDE 480 DEINVPSVLL QL

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MPTPPEALEQ AQHREVSPPL NHICDICHKG FRSGQALGGH KSMHFRESEA IITSATTSTS  60
DPICCLVCGK NFLSKKSLFR HLRSHTGNLS PRAGYNSGNS SSTVSDEPTF DDGKCDGVDS  120
GSRFDLSKTL PAGWSITRRR KRNALGTSAS DCSGSDETAG NSGLDLSPKL ELVTVDPKLE  180
AEEFSGLVML AQVCAEEASR RNLINNNQVY QNGQIEIRYV AIECKRRRLN DGYERRWSAA  240
DHYGYNCNDI DSDFRCKLCN KTFTSYQALG GHMSSHYRLK INSKDHDHAQ FNFEQHNEQH  300
SLLPQVVSTY SCNVCDKTFS GYQALGAHIL SHCKDVNDNN THNSAHNRVI KDNNVPEPRQ  360
VELHSCGVCN KEFTSYQALG GHKSSHTKYN NNNNMDRDQS NSDISTGGAE DKNERQKLYV  420
TVPHQCEECK KTFPTGQALG GHKRLHWKGP TGATAKPSQQ SSARRPLEFD LNEIPSMEDE  480
DEINVPSVLL QL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	229	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43170.1	1e-15	C2H2 family protein