PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0079421

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 326aa MW: 37014.8 Da PI: 7.5397

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0079421	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.8	6.2e-17	106	214	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkv 68 kfY+ Y++ +GFs+rk+++ + r++ +++r++vCsk+gk++ + k+ +++ r + +r+gC a + + RcHm_v2.0_Chr5g0079421 106 KFYHLYSRVIGFSTRKDRKVRAYRSEFVIRREWVCSKQGKATINAKRqglkekgktllqaekkkmkRNQCPRGKRYSRVGCMAGFGI 192 6***************************************999999*******998766555556688999****** PP FAR1 69 kkek.dgkwevtkleleHnHel 89 + k ++k+ v+k+ ++HnH++ RcHm_v2.0_Chr5g0079421 193 RYCKeRKKYFVSKFITNHNHDV 214 999***************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MENNEGGVCY TDHLYHSSFP SDEEVSDDDG LLQIGEDEEG FFYDGGEKGL GHTSENGNGK 60 CHLMDMETLD GTNVGGCVDL NGKDYSNLNM DDMKDVVFSS VCETEKFYHL YSRVIGFSTR 120 KDRKVRAYRS EFVIRREWVC SKQGKATINA KRQGLKEKGK TLLQAEKKKM KRNQCPRGKR 180 YSRVGCMAGF GIRYCKERKK YFVSKFITNH NHDVAVSEEV QFLHSHRGVT DSVIAQVEAL 240 QKAQVHISRI YENFGSMLVF SHSKNHSWVI NEKVSKFSCS IAPKFLISNA DTDILLLSNG 300 TSGVEWLYPM VSNLTVQTLW ESITLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-14	FAR1 family protein