PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0076711
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 249aa    MW: 27986.2 Da    PI: 8.3352
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0076711genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.42.8e-143091257
                            T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            r+R+ +t++ +++L+elF++   r p+ e+++++  +l    +++ ++V++WF N+Ra+ek+
  RcHm_v2.0_Chr5g0076711 30 RTRWIPTTDHVRILKELFYNkgIRSPTIEQIQRICLQLkwygKIEFKNVYFWFVNQRAREKQ 91
                            89*****************7679*************************************97 PP
2Wus_type_Homeobox83.42.7e-272993265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            +rtRW Pt++ ++iL+el++ +G+r+P+ e+iqri  +L+ yGkie kNV++WF N++aRe+qk+
  RcHm_v2.0_Chr5g0076711 29 SRTRWIPTTDHVRILKELFYnKGIRSPTIEQIQRICLQLKWYGKIEFKNVYFWFVNQRAREKQKK 93
                            789**************98769*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MEPQNRHPTE DGGSNEAAWS SANMLRRKSR TRWIPTTDHV RILKELFYNK GIRSPTIEQI  60
QRICLQLKWY GKIEFKNVYF WFVNQRAREK QKKRSTSDVH VPMQRSGLVG DDNVTNWKHE  120
DQYINFGSSA PASASSAGVM IAFNRQMGKY GGYGSMNMEK SARDCSISAG GETSSTFFDM  180
NVEQTFMEQR GEHHQEIETL SLFPVHGEDI CGNMKTTSDG GGGHDGGSHT SLELSLSCEG  240
KAGKSFQSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-27WOX family protein