PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0068581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 300aa    MW: 33675.8 Da    PI: 9.8837
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0068581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-082772245
                            SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                             +WT+ E + + +a +++ ++   +W+++a++++ g+t  +++  + 
  RcHm_v2.0_Chr5g0068581 27 SKWTPAENKMFENALALHDKDtpdRWHKVAAMIP-GKTVGDVVKQYK 72
                            58********************************.****99998875 PP
2Myb_DNA-binding46.49e-15135179347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT++E++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  RcHm_v2.0_Chr5g0068581 135 PWTEDEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 179
                             8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MKLEMEILSP SSYFSASNWL LEETKSSKWT PAENKMFENA LALHDKDTPD RWHKVAAMIP  60
GKTVGDVVKQ YKELEADVGK IEAGLVPIPG YGTSPFTLEW VNRHGYDGFK QTYGIGGKRP  120
SSTRPADHER KKGVPWTEDE HKLFLMGLKK YGKGDWRNIS RNFVVTRTPT QVASHAQKYF  180
IRQHSGGKDK RRASIHDITT VNLSDTRTPS PDNKPPSPPD HHHSAAFPQQ PNSARIPPFQ  240
WHQGGNGANM AFGQAHGNMF MSNTYGVGSY GLNKSAVHES YYAPQNMVFQ MQSAQHYPHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-106MYB family protein