PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0066111
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 315aa    MW: 34155 Da    PI: 5.3934
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0066111genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.34.8e-30160213155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  RcHm_v2.0_Chr5g0066111 160 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 213
                             59*******************.********************************8 PP
2Myb_DNA-binding48.42.2e-15162212148
                             TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                             r+ WT+++++++vd+v+ lG +   +ktI++ m+ +g+t++++ s++qky+
  RcHm_v2.0_Chr5g0066111 162 RLVWTPQLHKRFVDVVAHLGIKnaVPKTIMQLMNvEGLTRENVASHLQKYR 212
                             789*******************9***************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MGEEVRMSEY EGGGSGGDGD EERVSEWEAG LPIADDLTPL SQPLIPMELA SAFSISPEPC  60
RTVVDVNRAS QKTVSTLRGG AHSQAYSSNY KSFEENNNRS DEPMVVELDE TEPYGGGGGG  120
EGSDSRKSRR VDSPEEADSA LRIENSSGGG EDPSGRAVKR PRLVWTPQLH KRFVDVVAHL  180
GIKNAVPKTI MQLMNVEGLT RENVASHLQK YRLYLKRMQG LSNEGPSSSD QLFASTPVPQ  240
SLHESGGSGP GHRQGHMPVS IPMPYPPGAM MAMPSYMGMS GGYHGFESHP SYNMMQQQKY  300
GSMVSYPPHV APNEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.29e-84G2-like family protein