PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065491
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 661aa    MW: 74497.6 Da    PI: 6.2427
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065491genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.52.2e-1132866561373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l+ lL++cAeavs +d e a++lL+++ +++sp gd +qRla++f++AL+arla++++++y al++++ s    +++l++++++  v
  RcHm_v2.0_Chr5g0065491 286 LRALLISCAEAVSVDDRETASELLKQIMQHSSPLGDCTQRLAHCFANALEARLAGTGTQIYTALTTKRMS---AADSLKFYQAYIAV 369
                             5789*********************************************************999999998...99************ PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P++k+  + aN +Il+a+e++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTgv+ p+sg   +e ++etg+rLak+++++
  RcHm_v2.0_Chr5g0065491 370 CPFMKLLMIFANDMILKAAEKAETLHIIDFGILYGFQWPALIHCLSRRPGGPPKLRITGVELPSSGfrPEEGVQETGHRLAKYCRRF 456
                             *****************************************************************9********************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +v+fe+   +ak++e+l++++Lrv+++E+laVn+  + ++llde+v  +s+rd+vL+l+++l+P+v+v +  + +h ++ F+ rf  
  RcHm_v2.0_Chr5g0065491 457 NVHFEYYG-IAKKWETLQFDDLRVQRNEVLAVNCLCRFKYLLDETVVANSPRDTVLNLIRKLNPDVFVQCVVNRSHHAPFFVPRFRV 542
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++salfd+l+++lp++++ r   E+e++gre+vn vaceg++r+ r et+++W+ r ++aGF+++pl+ ++++++k  +++ + 
  RcHm_v2.0_Chr5g0065491 543 ALFHFSALFDMLDNNLPPDDQMRFGFEKEFIGREVVNTVACEGSQRIVRPETFKQWQIRNMRAGFRQLPLDREVMNKIKDKVKMGYH 629
                             **************************************************************************************9 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                               + v+e+ +++++gWk+r +++  +W
  RcHm_v2.0_Chr5g0065491 630 PYFVVDEDGHWMLQGWKGRIMFASACW 656
                             99************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    
MDPRFSEFRN FDDQTLLPDM LSEYPSSDPS QDHSFLDPNP SNSSSSFSPE GDDGEFSDSV  60
LNYINKVLME EDMESKPCMF HDPLALQATE ESLHEIIGGK YPTSQDQNPL CADQNVHGNG  120
NGNGMVGCEL MVPDVICKNE LLVQFNRGAE EGSKFLPRHQ LISAEGNKPY AVADRKAGDV  180
VVTTQKNGSE HFRVGSRGKK NHQREDIDLA DGRSNKQSAV YMDGEEGELS DIFDKVLLCK  240
PIMSKDDQFS QNGANNGLQQ DGLSVGIGNG KVCGKNQGNK KEVIDLRALL ISCAEAVSVD  300
DRETASELLK QIMQHSSPLG DCTQRLAHCF ANALEARLAG TGTQIYTALT TKRMSAADSL  360
KFYQAYIAVC PFMKLLMIFA NDMILKAAEK AETLHIIDFG ILYGFQWPAL IHCLSRRPGG  420
PPKLRITGVE LPSSGFRPEE GVQETGHRLA KYCRRFNVHF EYYGIAKKWE TLQFDDLRVQ  480
RNEVLAVNCL CRFKYLLDET VVANSPRDTV LNLIRKLNPD VFVQCVVNRS HHAPFFVPRF  540
RVALFHFSAL FDMLDNNLPP DDQMRFGFEK EFIGREVVNT VACEGSQRIV RPETFKQWQI  600
RNMRAGFRQL PLDREVMNKI KDKVKMGYHP YFVVDEDGHW MLQGWKGRIM FASACWAPSR  660
T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein