PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0062851
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 202aa    MW: 22751.1 Da    PI: 4.8665
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0062851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.8e-16243548
                            -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  RcHm_v2.0_Chr5g0062851  2 TPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43
                            9*****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MTPQEERLVL ELHSKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKAQEK KRAVSPSSSS  60
SNCSSSSNIT TNEGGASFYD TGGAEIVASS AEKKNINSGD QEKEDGNDTT KRDQREYSLD  120
DIWKDINLPE VNSIEPVYDG SYGEEVCKFS CPLMATPPPL SWDSLFKIDE DQESKNMFLP  180
TTPSDNQFLS CFEYGKASSL TG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.21e-47MYB_related family protein