PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0056881
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 366aa    MW: 40012.1 Da    PI: 5.1174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0056881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.7e-11143185855
                             HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              Er+RR r+++++  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  RcHm_v2.0_Chr5g0056881 143 SERKRRGRMKEKLYALRSLVPNI-----TKMDKASIVGDAVSYVQDLQ 185
                             6*********************7.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MDGMGASGNH DLGGHSIIND FELQDFIDDA NFDQFINLIR GENEDPAAAH FDCDLISGSC  60
FVDNQFSPTT PGSGFFGLDH NTTVVSDPAP FLTTLPNFDG EMNDIGEEDN DADSCGTTTT  120
TTTNTTATTT KKPKVDRSRT LVSERKRRGR MKEKLYALRS LVPNITKMDK ASIVGDAVSY  180
VQDLQKHAKK LEAEISGLEA SIEGSGVKQA VSTQNPTKNK LVADKYHLTP TEIIQVRLIT  240
PLGARIRVTI IKFNIIFRAT SFGISSFAPT LFSNIDVSQV EEKSFYVKVG CNKGVGVATA  300
LYKAIESLTS FNVLSSNLNT VNSGRFEITL CLNVKESEQE IINLPNLKLW VTGAFLNQGF  360
ELATRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.14e-71bHLH family protein