PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0052571

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 552aa MW: 62585.7 Da PI: 5.8451

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0052571	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.9	3e-47	98	223	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 ppG+rF+P+d+elv +yL+kk+ +++l+ + i ev++y+++P++L +++++ +ekewyfF++rd+ky++g r+nra+ +gyWkatg RcHm_v2.0_Chr5g0052571 98 PPGYRFNPRDDELVRYYLQKKIMDEPLPP-NKIMEVNLYRHNPETLAERYETyGEKEWYFFTPRDRKYRNGFRPNRAAGDGYWKATG 183 9***********************999.77**********9655544889*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++ s ++ +vg++k Lvfy+g+ pkg+kt+W+mheyr+ RcHm_v2.0_Chr5g0052571 184 ADKTIRS-GNVEVGCRKALVFYRGKPPKGKKTNWIMHEYRV 223 **9.999**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MSSPSKSPTM ELVQQSHPHP KASVTQVTAY GGSPSPIKQL QPIPNEADRK ASFTGTHDAI 60 VVSSVAAEVD QFSDVEEELN NFNNNQKRQQ DAFLNSFPPG YRFNPRDDEL VRYYLQKKIM 120 DEPLPPNKIM EVNLYRHNPE TLAERYETYG EKEWYFFTPR DRKYRNGFRP NRAAGDGYWK 180 ATGADKTIRS GNVEVGCRKA LVFYRGKPPK GKKTNWIMHE YRVPDSPDSR PPKRTENDMR 240 LDNWVLCRIY KKADNKNNKS QSRNHVEDPV EESVSTSLPD NMDMDLEANG QVDNPQALES 300 EKAYPYPIVH PPLEFDRAYP NYAFPYPGGR PLCALVNNNM NNMLHHHRFQ PVSLNSGDSY 360 ANMGQMQQAC GTYSPMQFPD QNCGVQFSDQ KRGVQFSDQR FIMQPVDVTS GSMVCTDDQK 420 CGVQFPDEKF IMQSLDVTSE SMVCTDEACS DQKCGRQFPD QKFIVQSPDG SPKPMTFSQE 480 KSGKSGQPDD AVDSRPSSVP PLPNQKSTQQ GMGKPLLPPS DQGLRYVEES NEDHNLMFGY 540 PPFASLETFS WP

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MSSPSKSPTM ELVQQSHPHP KASVTQVTAY GGSPSPIKQL QPIPNEADRK ASFTGTHDAI  60
VVSSVAAEVD QFSDVEEELN NFNNNQKRQQ DAFLNSFPPG YRFNPRDDEL VRYYLQKKIM  120
DEPLPPNKIM EVNLYRHNPE TLAERYETYG EKEWYFFTPR DRKYRNGFRP NRAAGDGYWK  180
ATGADKTIRS GNVEVGCRKA LVFYRGKPPK GKKTNWIMHE YRVPDSPDSR PPKRTENDMR  240
LDNWVLCRIY KKADNKNNKS QSRNHVEDPV EESVSTSLPD NMDMDLEANG QVDNPQALES  300
EKAYPYPIVH PPLEFDRAYP NYAFPYPGGR PLCALVNNNM NNMLHHHRFQ PVSLNSGDSY  360
ANMGQMQQAC GTYSPMQFPD QNCGVQFSDQ KRGVQFSDQR FIMQPVDVTS GSMVCTDDQK  420
CGVQFPDEKF IMQSLDVTSE SMVCTDEACS DQKCGRQFPD QKFIVQSPDG SPKPMTFSQE  480
KSGKSGQPDD AVDSRPSSVP PLPNQKSTQQ GMGKPLLPPS DQGLRYVEES NEDHNLMFGY  540
PPFASLETFS WP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-61	NAC family protein