PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0050641

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SRS

Protein Properties

Length: 412aa MW: 43320.5 Da PI: 8.063

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0050641	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	206.1	9.6e-64	175	343	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqs 84 + +CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq + + ++ ++++ +++++k++r +s++++ RcHm_v2.0_Chr5g0050641 175 SALTCQDCGNQAKKDCNHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLMSEGVAAAGSSAStshtnnTSSNAKKPRLVTSQNTT 261 5679*******************************************87765433322222223445578888888888888888 PP DUF702 85 alsstklssaeskkeletss............lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153 +++ ++s+++++++ + +s +P +v+++avf+cvrv++vdd +e+e+aY+++v+i+GhvfkG+LydqG+e RcHm_v2.0_Chr5g0050641 262 PSHTNSTSNTTPPRSYDSTSklqrqdggfpetMPGQVRAPAVFKCVRVTAVDDgAEDEYAYHAVVKINGHVFKGFLYDQGVE 343 8888899999999999988899***************************88999********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MWSSSSGPSR PINYGFPPEM GMLGLRDVFL VAPAAAYHNH PHHHHHHHHP PHHQQDLLSS 60 DHNSMNGSNP ATALGVGVGV IPLLTTTPCL GPSNTNMNDD NDDDDDHNML SGRNRNSAGG 120 GGGSIHLWQQ PTQQQHQLFL KKNQNLHGGA HLMVQGGGGG NFGASAASAS ASASSALTCQ 180 DCGNQAKKDC NHRRCRTCCK SRGFDCTTHV KSTWVPAARR RERQLMSEGV AAAGSSASTS 240 HTNNTSSNAK KPRLVTSQNT TPSHTNSTSN TTPPRSYDST SKLQRQDGGF PETMPGQVRA 300 PAVFKCVRVT AVDDGAEDEY AYHAVVKING HVFKGFLYDQ GVEGQGRDHH GFPNISDLHL 360 GGRSGGATST PTGRNGGAPI LDPADAYAAA AAAASTSGGL LLGVSNFGNS IN

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MWSSSSGPSR PINYGFPPEM GMLGLRDVFL VAPAAAYHNH PHHHHHHHHP PHHQQDLLSS  60
DHNSMNGSNP ATALGVGVGV IPLLTTTPCL GPSNTNMNDD NDDDDDHNML SGRNRNSAGG  120
GGGSIHLWQQ PTQQQHQLFL KKNQNLHGGA HLMVQGGGGG NFGASAASAS ASASSALTCQ  180
DCGNQAKKDC NHRRCRTCCK SRGFDCTTHV KSTWVPAARR RERQLMSEGV AAAGSSASTS  240
HTNNTSSNAK KPRLVTSQNT TPSHTNSTSN TTPPRSYDST SKLQRQDGGF PETMPGQVRA  300
PAVFKCVRVT AVDDGAEDEY AYHAVVKING HVFKGFLYDQ GVEGQGRDHH GFPNISDLHL  360
GGRSGGATST PTGRNGGAPI LDPADAYAAA AAAASTSGGL LLGVSNFGNS IN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	3e-64	SRS family protein