PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0042361
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 303aa    MW: 34640.9 Da    PI: 8.3906
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0042361genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.57.8e-1778224290
                    FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......................................... 47 
                             fY  Y+  +GFs rk+k  ++   + +++r++vCskeg+r+++ k+                                         
  RcHm_v2.0_Chr5g0042361  78 FYAYYSLAMGFSFRKEKLCRN-AAQVVVRRQLVCSKEGERKKRGKSdpsfaseiiscakntspphgtkpvckrktvnqkpivedadt 163
                             9******************99.7777*******************9***************************************** PP

                    FAR1  48 .................tekerr...traetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                                              ++   +   +r+ tr +C+a+++ ++ k +g+++v ++ +eHnH+la
  RcHm_v2.0_Chr5g0042361 164 rsmkrsgkqfgdgehekKR---QrppQRNITRGNCQARITARRCKeNGVFRVVQFITEHNHDLA 224
                             ************9864333...3355999**************999****************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MDGSGMRFSE PNYHGWSVDE DDFSDEYEEL FSDEEASQSA NMDENLDCLH FNGKKYEDLR  60
SSDMIGVEFS SVKEVDTFYA YYSLAMGFSF RKEKLCRNAA QVVVRRQLVC SKEGERKKRG  120
KSDPSFASEI ISCAKNTSPP HGTKPVCKRK TVNQKPIVED ADTRSMKRSG KQFGDGEHEK  180
KRQRPPQRNI TRGNCQARIT ARRCKENGVF RVVQFITEHN HDLATTEFVP FLRSHRKVRD  240
HDVAQVTALK KVSVGTCRAY ELLVHQAGGH EFFGFLIKDL YNKMDSEGRN SWLMVTPSPQ  300
LVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-08FAR1 family protein